Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6577584 chr1:6715390 T/G 5.77E-5 492 29.23 31.87 29.7 KM Plot
PRAD rs6577585 chr1:6715440 G/A 5.77E-5 492 29.23 31.87 29.7 KM Plot
PRAD rs6577586 chr1:6719008 G/A 6.24E-5 483 29.15 31.62 30.73 KM Plot
PRAD rs6577587 chr1:6719637 T/C 0.000131 492 29.97 31.2 30.73 KM Plot
PRAD rs6578261 chr11:1340304 C/G 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs6578263 chr11:1343846 A/G 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs6580123 chr5:154333737 A/T 0 489 30.3 32.85 4.87 KM Plot
PRAD rs6583620 chr8:143450095 G/C 1.19E-5 490 30.8 31.65 28.77 KM Plot
PRAD rs6599368 chr4:69567 A/T 2.24E-9 492 30.8 31.13 33.23 KM Plot
PRAD rs6599371 chr4:74015 A/G 7.74E-6 494 30.8 30.97 39.23 KM Plot
PRAD rs6601914 chr10:5172228 A/C 0.000139 494 28.57 30.27 31.4 KM Plot
PRAD rs66532938 chr7:6780657 GA/G 8.34E-5 484 30.93 29.45 38.33 KM Plot
PRAD rs6657759 chr1:160149606 A/G 2.57E-5 471 31.43 25.67 26.37 KM Plot
PRAD rs6659873 chr1:6723806 T/G 0.000129 493 29.97 31.27 30.73 KM Plot
PRAD rs6664683 chr1:31786743 A/G 8.47E-6 493 22.87 31.3 30.93 KM Plot